International Journal of Biophysics

International Journal of Biophysics is a peer-reviewed, open access international journal that publishes original research articles as well as review articles in all areas of biophysics. The primary goal of this journal is to advance the understanding of biological structure and function by application of the principles of physical science, and by presenting the work in a biophysical context.


Enrique Hernández-Lemus

Editorial Board Member of International Journal of Biophysics

Associate Professor, National Autonomous University of México, Mexico

Research Areas

Non-Equilibrium Statistical Mechanics of Biological Systems, Computational Systems Biology

Education

PhDChemical Physics, Extended irreversible thermodynamics, Critical phenomena, Transport Processes, Mathematical Statistical Mechanics

Experience

2011Visiting Scientist, Cancer Analysis Group, Broad Institute of Harvard and Massachusets Institute of Technology
2009Visiting Scientist, System’s Biology and Functional Genomics Group, Computational Biology Center, IBM TJ Watson Research Center
2009-PresentAssociate Professor: Center for Complexity Sciences, National Autonomous University of México
2009-present Full Researcher: Computational Genomics Department, National Institute of Genomic Medicine
2006-2009Associate Researcher: Computational Genomics Department, National Institute of Genomic Medicine
2004-2005Associate Professor: Mathematics & Statistics Department, Center for Studies in Science Communication
2000-2003Assistant Professor: Theoretical Chemistry and Physics Department, Chemistry School, National Autonomous University of México
1997-2000Lecturer: Theoretical Chemistry and Physics Department, Chemistry School, National Autonomous University of México

Publications: Conferences/Workshops/Symposiums/Journals/Books

[1]  Hernández-Lemus, E.¤, Orgaz, E. Hysteresis in nonequilibrium steady states: the role of dissipative couplings, Rev. Mex. Fis. 48 Sup. 1 38-45 (2002).
[2]  Cantú-Bolán, B., Hernández-Lemus, E.¤ Statistical properties and linguistic coherence in noncoding DNA sequences, Rev. Mex. Fis. E 51 (2) 118-125, (2005)
[3]  Hernández-Lemus, E.¤, García-Colín, L.S. Non-equilibrium critical behavior: An extended irreversible thermodynamics approach, Journal of Non-Equilibrium Thermodynamics, 31, 4, 397-417, (2006) .
[4]  Cantú-Bolán, B., Hernández-Lemus, E. ¤ El carácter lingüístico y la coherencia textual presentes en el ADN no codificante, Estudios de Antropología Biológica 13, (2007) . [In Spanish]
[5]  Estrada-Gil, J.K., Fernández-López, J.C., Hernández-Lemus, E., Silva-Zolezzi, I., Hidalgo-Miranda, A., Jiménez-Sánchez, G. Vallejo-Clemente, E.E. GPDTI: A Genetic Programming Decision Tree Induction method to find epistatic effects in common complex diseases, Bioinformatics 23(13):i167-74 (2007) .
[6]  Dagdug, L., Álvarez-Ramírez, J., López, C., Moreno, R., Hernández-Lemus, E. Correlations in a Mozart's Music Score (K-73x) with Palindromic and Upside-Down Structure, Physica A 383, 2, 570-584, (2007)
[7]  Hernández-Lemus, E.¤, Estrada-Gil, J.K. Stochastic measures and modular evolution in non-equilibrium thermodynamics, Electronic Journal of Theoretical Physics 5, 17, 163-184, (2008) .
[8]  Hernández-Lemus, E.¤, Estrada-Gil, J.K., Silva-Zolezzi, I., Fernández-López, J.C., Hidalgo-Miranda, A., Jiménez-Sánchez, G. Nonlinear Analysis of Time Series in Genome-Wide Linkage Disequilibrium Data, American Institute of Physics Conf. Proc. Volume 978 (Biological Physics), 1, 34-56, (2008) .
[9]  Hernández-Lemus, E.¤ Fenómenos multiescala, complejidad y flujos de información en sistemas biológicos in La Física Biológica en México: Temas Selectos 2, García-Colín, L.S., Dagdug, L., Picquart, M. Vázquez, E., (eds.), El Colegio Nacional, (2008) [In Spanish]
[10]  Silva-Zolezzi I, Hidalgo-Miranda A, Estrada-Gil J, Fernández-López JC, Uribe-Figueroa L, Contreras A, Balam-Ortiz E, del Bosque-Plata L, Velázquez-Fernández D, Lara C, Goya R, Hernández-Lemus E, Dávila C, Barrientos E, March S, Jimenez-Sanchez G. Analysis of genomic diversity in Mexican Mestizo populations to develop genomic medicine in Mexico. PNAS 2009 May 26;106(21):8611-6.
[11]  Hernández-Lemus, E. ¤, Velázquez-Fernández, D., Estrada-Gil, J.K., Silva-Zolezzi, I., Herrera-Hernández, M.F., Jiménez-Sánchez, G., Information Theoretical Methods to Deconvolute Genetic Regulatory Networks applied to Thyroid Neoplasms, Physica A 388 (2009) 5057-5069.
[12]  Hernández-Lemus, E.¤ Non-Equilibrium Thermodynamics of Gene Expression and Transcriptional Regulation, Journal of Non-Equilibrium Thermodynamics, 34, 4, 371-394, (2009).
[13]  Baca-López, K. Hernández-Lemus, E. ¤, Mayorga, M., Information-theoretical analysis of gene expression data to infer transcriptional interactions, Rev. Mex. Fis. 55, 6, 456-466, (2009).
[14]  Hernández-Lemus, E.¤, Extended Irreversible Thermodynamics of Gene Regulation, Journal of Non-Newtonian Fluid Mechanics, 165, 1029-1032, (2010).
[15]  Hernández-Lemus, E.¤, Non-equilibrium thermodynamics of transcriptional bursts, in New Trends in Statistical Physics: Festschrift in honor of Leopoldo García-Colín's 80 th Birthday, Macías, A., Dagdug, L. (eds.), World Scientific, (2010).
[16]  Jiménez-Sánchez, G, Hernández-Lemus, E.¤, Hidalgo-Miranda, A. La variabilidad genómica y sus implicaciones en el cuidado de la salud in Introducción a la Física Biológica, García-Colín, L.S., Dagdug, L., (eds.), El Colegio Nacional, (2010) [In Spanish]
[17]  Hernández-Lemus, E.¤, Biological Physics in Mexico: Review and New Challenges, Journal of Biological Physics 37, 2, 167-184, (2011) http://dx.doi.org/10.1007/s10867-011-9218-8
[18]  Hernández-Lemus, E.¤, Correa-Rodríguez, M.D., Non-equilibrium hyperbolic transport in transcriptional regulation, PLoS ONE 6, 7, e21558 (2011) http://dx.plos.org/10.1371/journal.pone.0021558.
[19]  Baca-López, K, Correa-Rodríguez, MD, Flores-Espinosa, R, Garcia-Herrera, R, Hernández-Armenta CI, Hidalgo-Miranda A, Huerta-Verde, AJ, Imaz-Rosshandler, I, Martínez-Rubio, AV, Medina-Escareno, A, Mendoza-Smith, R, Rodriguez-Dorantes, M, Salido-Guadarrama, I, Hernández-Lemus, E¤, Rangel-Escareño, C¤, A three-state model for multidimensional genomic data integration, Proceedings of the ninth international conference for the Critical Assessment of Massive Data Analysis CAMDA, (2011)
[20]  Hernández-Lemus, E.¤, Rangel-Escareño, C., The role of information theory in gene regulatory network inference in Information Theory: New Research, Pierre Deloumeaux, Jose D. Gorzalka (Ed.), Mathematics Research Developments Series, Nova Publishing (2011) ISBN: 978-1-62100-395-3 .
[21]  Rodríguez, E. E., Hernández-Lemus, E. ¤, Itzá-Ortíz, B. A., Jiménez, I., Rudomín, P.¤, Multichannel detrended fluctuations analysis reveals synchronized patterns of spontaneous spinal activity in anesthetized cats, PLoS ONE (2011) (in press).
[22]  Hernández-Lemus, E. ¤, Baca-López, K., Bursting and synchronization in gene regulatory dynamics, Rev. Mex. Fis. (2011). (in press)
[23]  Hernández-Lemus, E. ¤, Acoplamientos no-lineales entre metabolismo y regulación transcripcional: Un enfoque de Termodinámica Irreversible, in Memorias de la Octava Reunión Metropolitana de Mecánica Estadística, Del Río-Correa, J.L., García-Colín, L.S. (eds.), El Colegio Nacional (2011) pp.313-332 (in press) [In Spanish]