Frontiers in Science

Frontiers in Science is a peer-reviewed, open access journal that publishes original research articles as well as review articles in all areas of science and technology.


Fei He

Post-doctoral Fellow, Brookhaven National Lab, USA

Research Areas

bioinformatics, systems biology, gene expression profiling, transcriptome, genomics, plant biology, embryogenesis

Publications: Journals

[1]  He, F., Zhang, Y., Chen, H., Zhang, Z., & Peng, Y.-L. (2008). The prediction of protein-protein interaction networks in rice blast fungus. BMC Genomics, 9(1), 519.
[2]  He, F., Zhou, Y., & Zhang, Z. (2010). Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data. Plant Physiology, pp–110.
[3]  Li, Z.-G., He, F.(co-first authors), Zhang, Z., & Peng, Y.-L. (2012). Prediction of protein--protein interactions between Ralstonia solanacearum and Arabidopsis thaliana. Amino Acids, 42(6), 2363–2371.
[4]  Du, Z., He, F.(co-first authors), Yu, Z., Bowerman, B., & Bao, Z. (2015). E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis. Developmental Biology, 398(2), 267–279.
[5]  Du, Z., Santella, A., He, F., Tiongson, M., & Bao, Z. (2014). De Novo Inference of Systems-Level Mechanistic Models of Development from Live-Imaging-Based Phenotype Analysis. Cell, 156(1), 359–372
[6]  Chen, S., Yang, Y., Shi, W., Ji, Q., He, F., Zhang, Z., … Xu, M. (2008). Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance. The Plant Cell Online, 20(7), 1850–1861.
[7]  Du, Z., Santella, A., He, F., …others. (2015) The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo. Developmental Cell
[8]  Foroni, E., Serafini, F., Amidani, D., Turroni, F., He, F., Bottacini, F., … others. (2011). Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium. Microb. Cell Fact, 10(Suppl 1), S16.
[9]  Li, H., He, F., Zhang, Z., & Zheng, S. J. (2011). Critical roles of amino acids Ser231, His107 and Asp156 of Staphylococcus sciuri exfoliative toxin C (ExhC) in the induction of skin exfoliations in neonate mice. Biologia, 66(6), 1189–1195.
[10]  Ventura, M., Turroni, F., Zomer, A., Foroni, E., Giubellini, V., Bottacini, F., …, He F., …, others. (2009). The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genetics, 5(12), e1000785.
[11]  Wang, T.-Y., He, F., Hu, Q.-W., & Zhang, Z. (2011). A predicted protein--protein interaction network of the filamentous fungus Neurospora crassa. Molecular bioSystems, 7(7), 2278–2285.
[12]  Xu, Q., Xiong, G., Li, P., He, F., Huang, Y., Wang, K. B., … Hua, J. P. (2012). Analysis of complete nucleotide sequences of 12 Gossypium chloroplast genomes: origin and evolution of allotetraploids. PLoS One, 7(8), e37128.
[13]  Zhou, Y., Zhou, Y.-S., He, F., Song, J., & Zhang, Z. (2012). Can simple codon pair usage predict protein--protein interaction? Molecular BioSystems, 8(5), 1396–1404.
[14]  Wang, S., Zhang, P., He, F., Wang, J.-G., Sun, J.-Z., Li, Z.-L., … others. (2014). Combination of specific single chain antibody variable fragment and siRNA has a synergistic inhibitory effect on the propagation of avian influenza virus H5N1 in chicken cells. Virology Journal, 11(1), 1–8.