[1] | Amit Ghosh, K.V. Brinda, and Saraswathi Vishveshwara. 2007 Dynamics of Lysozyme Structure Network: Probing the process of Unfolding. Biophysical Journal, 92(7):2523-2535. [Cover Page Illustration http://www.biophysj.org/content/vol92/issue7 ] |
[2] | Amit Ghosh and Saraswathi Vishveshwara. 2007. A study of Communication Pathways in Methionyl tRNA Synthetase by Molecular Dynamics Simulations and Structure Network analysis. Proc. Natl. Acad. Sci. U.S.A. 104(40), 15711-15716. |
[3] | Amit Ghosh and Saraswathi Vishveshwara. 2008. Variations in clique and community patterns in protein structures during allosteric communication: Investigation of dynamically equilibrated structures of methionyl tRNA synthetase complexes. Biochemistry, 7(44), 11398-407. |
[4] | Saraswathi Vishveshwara, Amit Ghosh and Priti Hansia. 2009. Intra and Inter molecular communications through Protein Structure Network. Curr Protein Pept Sci. 10(2), 146-160. |
[5] | Priti Hansia, Amit Ghosh, Saraswathi Vishveshwara. 2009. Ligand dependent Intra and Inter subunit Communication in Human Tryptophanyl tRNA Synthetase as Deduced from the Dynamics of Structure Networks. Molecular BioSystems. 5(12), 1860-72. |
[6] | Moitrayee Bhattacharyya, Amit Ghosh, Priti Hansia, Saraswathi Vishveshwara. 2010. Allostery and conformational free energy changes in human tryptophanyl-tRNA synthetase from essential dynamics and structure networks. Proteins: Structure, Function, and Bioinformatics. 78(3), 506-17. |
[7] | Amit Ghosh, Reiko Sakaguchi, Liu C, Saraswathi Vishveshwara and Ya-Ming Hou. 2011. Allosteric communication in Cysteinyl tRNA Synthetase: A network of direct and indirect readout. Journal of Biological Chemistry. 286(43), 37721-31 |
[8] | 8. Amit Ghosh, Huimin Zhao, and Nathan Price. 2011. Genome-scale Consequences of Cofactor Balancing in Engineered Pentose Utilization Pathways in Saccharomyces. PLoS One. 6(11), e27316. |
[9] | Héctor García Martín, Vinay Satish Kumar, Daniel Weaver, Amit Ghosh, Adam Arkin, Jay D. Keasling. A peptide-based method for 13C metabolic flux analysis in microbial communities. 2014 . PLoS Computational Biology, In Press |
[10] | Héctor García Martín, Vinay Satish Kumar, Daniel Weaver, Amit Ghosh, Adam Arkin, Jay D. Keasling. A 13C-based method for metabolic flux measurement and prediction in genome-scale models. (Under revision in Molecular Systems Biology) |