International Journal of Materials Engineering

The International Journal of Materials Engineering strives to publish articles related to fundamental properties of engineering materials, mechanical characterisation, how they are controlled by processing, formed, joined and finished, and how all of these factors influence the selection and design of materials in real-world engineering applications.

Yaroslava Yingling

Assistant Professor, Department of Materials Science and Engineering, North Carolina State University, USA

Research Areas

Soft and nanomaterials, biomaterials, simulations and modeling

Education

2004-2007postdocSt. Petersburg State Technical University
2002-2004postdocPennsylvania State University
2002Ph.D. minorPennsylvania State University
2002Ph.D.Pennsylvania State University
1996B.S.National Institutes of Health

Publications: Journals

[1]  H. Yi, A. Singh, Y. G. Yingling, "X3DBio: A Visual Analysis Tool for Biomolecular Structure Exploration", SPIE Visualization and Data Analysis Proceedings 8294 (2012) 82940S-1-8.
[2]  H. S. Kim, S. H. Ha, Y.-M. Koo, R. C. Pani, Y. G. Yingling, The role of hydrogen bonding in water-mediated glucose solubility in ionic liquids, J. Mol. Liquids (2012) 25-30.
[3]  A. Singh, L. Sethaphong, Y. G. Yingling, Interactions of cations with RNA loop-loop complexes, Biophysical J 101 (2011) 727-735.
[4]  A. Singh, Y. G. Yingling, Understanding of DNA-based materials assembly, Journal of Polymer Science B: Polymer Physics 49 (2011) 1563-1627.
[5]  M. A. Pasquinelli and Y. G. Yingling, Perspective on nanoparticle-biomolecules interactions from molecular dynamics simulations" in Molecular Modeling and Its Role in Advancing Nanotechnology, Encyclopedia of nanotechnology, (Springer, 2011), accepted.
[6]  A. Singh, S. Snyder, L. Lee, A. P. R. Johnston, F. Caruso, Y. G. Yingling, Effect of Oligonucleotide Length on the Assembly of DNA Materials: Molecular Dynamics Simulations of Layer-by-Layer DNA Films, Langmuir 26 (2010) 17339-17347.
[7]  A. Singh, Y. G. Yingling, Simulations of stretching single stranded DNA", Mater. Res. Soc. Symp. Proc. 1303 (2011) 10-1301-oo10-06.
[8]  L. Sethaphong, A. Singh, A. E. Marlowe, Y. G. Yingling, The sequence of HIV-1 TAR RNA helix controls cationic distribution, J. Phys. Chem C 114 (2010) 5506-5512.
[9]  A. V. Semichaevsky, A. E. Marlowe, Y. G. Yingling, Comparing ion distributions around RNA and DNA helical and loop-loop motifs, Mater. Res. Soc. Symp. Proc. 1130 (2009) W05-05.
[10]  V. A. Stupina, A. Meskauskas, J. C. Mccormack, Y. G. Yingling, B. A. Shapiro, J. D. Dinman, A. E. Simon, The 3' Proximal Translational Enhancer of Turnip Crinkle Virus Binds to 60S Ribosomal Subunits, RNA 14 (2008) 2379-2393.
[11]  J. C. McCormack, X. Yuan, Y. G. Yingling, W. Kasprzak, R. E. Zamora, B. A. Shapiro, A. E. Simon, Structural domains within the 3’ UTR of Turnip Crincle Virus, Journal of Virology 82 (2008) 8706-8720 .
[12]  B. A. Shapiro, E. Bindewald, W. Kasprzak, Y. G. Yingling, "Protocols for the In silico Design of RNA Nanostructures" in Nanostructure Design Methods and Protocols, Methods in Molecular Biology series, Vol. 474, E. Gazit and R. Nussinov, Eds., (Humana Press, 2008).
[13]  E. Bindewald, R. Hayes, Y. G. Yingling, W. Kasprzak, B. A. Shapiro, RNAJunction: A Database of RNA Junctions and Kissing Loops for Three-Dimensional Structural Analysis and Nanodesign, Nucleic Acids Research 36 (2008) D392-D397.
[14]  Y. G. Yingling, B. A. Shapiro, Computational design of an RNA hexagonal nano-ring and an RNA nanotube, Nano Letters 7 (2007) 2328-2334.
[15]  B. A. Shapiro, Y. G. Yingling, W. Kasprzak, E. Bindewald, Bridging the gap in RNA structure prediction, Current Opinion in Structural Biology 17 (2007) 157-165.
[16]  M. Prasad, P. F. Conforti, B. J. Garrison, Y. G. Yingling*, Computational Investigation into the Mechanisms of UV Ablation of Poly (methyl methacrylate), Applied Surface Science 253 (2007) 6382-6385.
[17]  Y. G. Yingling, B. J. Garrison, Incorporation of chemical reactions into UV photochemical ablation of coarse-grained material, Applied Surface Science 253 (2007) 6377-6381 .
[18]  Y. G. Yingling, B. A. Shapiro, The Impact of Dyskeratosis Congenita Mutations on Structure and Dynamics of the Telomerase RNA Pseudoknot Domain, Journal of Biomolecular Structure and Dynamics 24 (2007), 303-320.
[19]  Y. G. Yingling, B. A. Shapiro, The Prediction of the Wild-type Telomerase RNA Pseudoknot Structure and the Pivotal Role of a Bulge in its Formation, Journal of Molecular Graphics and Modelling 25 (2006) 261-274.
[20]  P. F. Conforti, Y. G. Yingling, B. J. Garrison, Computational Studies of Ultraviolet Ablation of Poly(Methyl MethAcrylate), Journal of Physics: Conference Series 59 (2007), 322-327.
[21]  W. A. Hastings, Y. G. Yingling, G. S. Chirikjian, B. A. Shapiro, Structural and Dynamical Classification of RNA Single-Base Bulges for Nanostructure Design, Journal of Computational and Theoretical Nanoscience 3 (2006) 63-77.
[22]  Y. G. Yingling, B. A. Shapiro, Dynamic Behavior of the Telomerase RNA Hairpin Structure and Its Relationship to Dyskeratosis Congenita, Journal of Molecular Biology 348 (2005) 27-42.
[23]  Y. G. Yingling, B. J. Garrison, Coarse-Grained Model of Interaction of Light with Polymeric Material: Onset of Ablation, J. Phys. Chem. B 109 (2005) 16482-16489.
[24]  Y. G. Yingling, P. F. Conforti, B. J. Garrison, Theoretical Investigation of Laser Pulse Width Dependence in Thermal Confinement Regime, Appl. Phys. A 79 (2004) 757-759.
[25]  Y. G. Yingling, B. J. Garrison, Coarse Grained Chemical Reaction Model, Feature Article in J. Phys. Chem. B 108 (2004) 1815-1821.
[26]  Y. G. Yingling, B. J. Garrison, Photochemical Ablation of Organic Solids, Nucl. Instrum. Methods Phys. Research B 203 (2003) 188-194.
[27]  L. V. Zhigilei, Y. G. Yingling, T. E. Itina, T. A. Schoolcraft, B. J. Garrison, MD Simulations of MALDesorption-Connections to Experiment, Int. J. Mass Spectrom. 226 (2003) 85-106.
[28]  L. V. Zhigilei, E. Leveugle, B. J. Garrison, Y. G. Yingling, M. I. Zeifman, Computer Simulations of Laser Ablation of Molecular Substrates, Chem. Reviews 103 (2003) 321-348.
[29]  J. Garrison, A. Delcorte, L. V. Zhigilei, T. E. Itina, K. D. Krantzman, Y. G. Yingling, C. M. McQuaw, E. J. Smiley, N. Winograd, Big Molecule Ejection-SIMS vs. MALDI, Appl. Surf. Sci. 69-71 (2003) 203-204.
[30]  Y. G. Yingling, B. J. Garrison, Photochemical induced effects in material ejection in laser ablation, Chem. Phys. Lett. 364 (2002) 237-243.
[31]  Y. G. Yingling, L. V. Zhigilei, B. J. Garrison, The Role of the Photochemical Fragmentation in Laser Ablation, J. Photochemistry and Photobiology A: Chemistry 145 (2001) 173-181.
[32]  Y. G. Yingling, L. V. Zhigilei, B. J. Garrison, Photochemical Fragmentation Processes in Laser Ablation of Organic Solids, Nucl. Instrum. Methods Phys. Research B 180 (2001) 171-175.
[33]  Y. G. Yingling, L. V. Zhigilei, B. J. Garrison, A. Koubenakis, J. Labrakis, S. Georgiou, Laser Ablation of Bi-component Systems: A Probe of Molecular Ejection Mechanisms, Appl. Phys. Lett. 78 (2001) 1631-1633.