American Journal of Bioinformatics Research

American Journal of Bioinformatics Research publishes all the newest and distinguished research articles, reviews and letters in all areas of bioinformatics and computational biology. Each issue contains a series of timely, in-depth written articles by leaders in the field, covering a wide range of the integration of biology with computer and information science.

Saraswathi Sundararajan

Editorial Board Member of American Journal of Bioinformatics Research

Post-doctoral Fellow, Battelle Center for Mathematical Medicine, Nationwide Children's Hospital, The Research Institute, Ohio State University, USA

Research Areas

Life Sciences, Bioinformatics, Translational and Clinical Medicine, Machine Learning and Optimization, Proteomics

Experience

2011Laurence H. Baker Center for Bioinformatics and Biological Statistics, Iowa State University, Postdoc, Bioinformatics-Machine Learning
2011-presentOhio State University-Nationwide Children's-Battelle Center for Mathematical Medicine, Postdoc, Bioinformatics-Machine Learning
2002Ecommerce Engineering Training (UC-Santa Cruz, USA) and CCNA certification, E-Commerce Engineering, Web application Development

Academic Achievement

2006 INCOB 2006, Ttravel award S$1000
2010 ISMB, Boston, Travel Award $650
2010 IJCCI/ICNC Travel award 400 Euros
2011 Pacific Symposium, PSB, Travel award : $1250
2007-2011 Recipient of National Science Foundation IGERT Research Fellowship, Iowa State University.

Membership

Founder and Chairperson, ISCB-SC-RSG-Singapore
Founder, ISCB-SC-RSG-India
Founder and President, ISCB-SC-RSG-USA

Publications: Journals

[1]  Juan Luis Fernández-Martínez1 , Esperanza García-Gonzalo1, Saras Saraswathi, Robert L. Jernigan, and Andrzej Kloczkowski, "Particle Swarm Optimization: A Powerful Family of Stochastic Optimizers. Analysis, Design and Application to Inverse Modelling, Advances in Swarm Intelligence , Lecture Notes in Computer Science, 2011, Volume 6728/2011, 1-8, DOI: 10.1007/978-3-642-21515-5_1
[2]  Saras Saraswathi, Andrzej Kloczkowski, and Robert L. Jernigan, "Prediction of Relative Solvent Accessibility of Residues in Proteins with a Fast Learning Neural Classifier, Proceedings of IJCCI/ICNC 2010, ISBN 978-989-8425-32-4, pp. 364-369. http://www.public.iastate.edu/~saras/Research/ICNC_SSP_2010
[3]  Saras Saraswathi, Andrzej Kolinski, , and Robert L. Jernigan, Andrzej Kloczkowski "Protein Secondary Structure Prediction Using Knowledge-Based potentials, Proceedings of IJCCI/ICNC 2010, ISBN 978-989-8425-32-4, pp. 370-375. http://www.public.iastate.edu/~saras/Research/ICNC_RSA_2010
[4]  S. Suresh, S. Saraswathi, N. Sundararajan, Performance Enhancement of Extreme Learning Machine for Multi-category Sparse Data Classification Problems", Engineering Applications of Artificial Intelligence'-2010. doi:10.1016/j.engappai.2010.06.009
[5]  Saraswathi S, Suresh Sundaram, Narasimhan Sundararajan, Michael Zimmerman and Marit Nilsen-Hamilton, (submitted June 2009), "'ICGA-PSO-ELM approach for Accurate Cancer Classification Resulting in Reduced Gene Sets Involved in Cellular Interface with the Microenvironment", 'IEEE Transactions in Bioinformatics and Computational Biology.-2011. pp. 452-463, (vol. 8 no. 2) http://www.computer.org/portal/web/csdl/doi/10.1109/TCBB.2010.13

Publications: Conferences/Workshops/Symposiums

[1]  Performance Enhancement of Extreme Learning Machine for Multi-category Sparse Data Classification", Pattern Analysis and Applications, S. Suresh, S. Saraswathi, N. Sundararajan and ICONIP 2006. http://www.public.iastate.edu/~saras/Research/EAAI_2010.pdf
[2]  "An Improved Gene Selection Method for Accurate Classification of Microarray Gene Expression Data", presented at INCOB 2006, S. Saraswathi, S. Suresh, , N. Sundararajan.
[3]  Saras Saraswathi, Andrzej Kloczkowski, and Robert L. Jernigan, "Prediction of Relative Solvent Accessibility of Residues in Proteins with a Fast Learning Neural Classifier, Proceedings of IJCCI/ICNC 2010, ISBN 978-989-8425-32-4, pp. 364-369. http://www.public.iastate.edu/~saras/Research/ICNC_SSP_2010
[4]  Saras Saraswathi, Andrzej Kolinski, , and Robert L. Jernigan, Andrzej Kloczkowski "Protein Secondary Structure Prediction Using Knowledge-Based potentials, Proceedings of IJCCI/ICNC 2010, ISBN 978-989-8425-32-4, pp. 370-375. http://www.public.iastate.edu/~saras/Research/ICNC_RSA_2010
[5]  Zimmermann M.T., Skliros A., Saraswathi S., Kloczkowski A., Jernigan R.L., (2010). Immunoglobulin Functional Motions and Their Effects on the Complementarity Determining Regions. Paper: Immunoinformatics and Computational Immunology Workshop (ICIW 2010), Niagara Falls, NY, U.S.A. August 2-4, 2010. ( Will be published in ACM proceedings) http://www.public.iastate.edu/~saras/Research/ICIW_1_2010